Genomics

Publications & research

The latest from our genomics research team:

InFlo: A Novel Systems Biology Framework Identifies cAMP-CREB1 Axis as a Key Modulator of Platinum Resistance in Ovarian Cancer

Dimitrova N. Nagaraj AB, Razi A, Singh S, Kamalakaran S, Banerjee N, Joseph P, Mankovich A, Mittal P, DiFeo A, Varadan V. OncoGene 2017; doi: 10.1038/onc.2016.398

I50. Identification of Distinctive Cell Signaling Patterns in Renal Cell Carcinoma Gene Expression TCGA Data Sets

K. Volyanskyy, N. Dimitrova. Association for Molecular Pathology Annual Meeting 2017

ST136. Genes with Clonal Mutations and Their Pathway Associations for Breast Cancer Subtypes

Y. Cheung, N. Dimitrova. Association for Molecular Pathology Annual Meeting 2017

ST124. A Study of Ovarian High Grade Serous Carcinoma with IHC p53 Positive and Negative Patterns by Targeted NGS

S. Zomorrodian, N. Dimitrova. Association for Molecular Pathology Annual Meeting 2017

ID64. Optimization of Metatranscriptomic Method for Rapid and Unbiased Detection of Microbial Pathogens in Bronchoalveolar Lavage Specimens

C. Yin, N. Dimitrova. Association for Molecular Pathology Annual Meeting 2017

Guidelines for Developing and Reporting Machine Learning Predictive Models in Biomedical Research: A Multidisciplinary View

Luo W, Phung D, Tran T, Gupta S, Rana S, Karmakar C, Shilton A, Yearwood J, Dimitrova N, Ho TB, Venkatesh S, Berk M., J Med Internet Res. 2016 Dec 16;18(12):e323. PMID: 27986644

Brief-exposure to preoperative bevacizumab reveals a TGF-β signature predictive of response in HER2-negative breast cancers

01 Feb, 2016

Non-linear Bayesian framework to determine the transcriptional effects of cancer-associated genomic aberrations

05 Nov, 2015

Abstract P4-08-02: PAPAyA – The genome informatics framework for oncology applications and other clinical domains

01 May, 2015

Abstract P3-05-18: RNA-seq reveals lncRNAs associated with hormonal influences and endocrine therapy

01 May, 2015

Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

03 Dec, 2014

Loss of DOK2 induces carboplatin resistance in ovarian cancer via suppression of apoptosis

05 May, 2013

Effective normalization for copy number variation detection from whole genome sequencing

26 Dec, 2012

A microRNA panel to discriminate carcinomas from high-grade intraepithelial neoplasms in colonoscopy biopsy tissue

25 April, 2012

Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer

08 Dec, 2011

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Philips is helping us create molecular reports with an easy workflow. We already depend on Philips imaging systems for radiology, and we're excited to work with their Genomics solution."

Dr. John T Fallon

Director of Laboratories, Westchester Medicinal Center, and Chairman of Pathology, New York Medical College